LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-221-3p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-221-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267240-267255
0.010
1
8mer
26695-26706
0.009
3
7mer
50489-50510
0.006
1
7mer
125821-125843
0.006
1
9mer
96771-96788
0.006
0
8mer
18706-18725
0.005
1
7mer
97781-97808
0.004
1
7mer
56819-56838
0.004
0
7mer
76619-76634
0.004
1
7mer
105225-105252
0.003
1
7mer
12254-12272
0.003
1
7mer
158961-158978
0.003
1
7mer
84375-84398
0.003
2
7mer
23613-23636
0.003
1
7mer
116877-116901
0.003
2
7mer
219916-219940
0.003
4
7mer
260248-260270
0.002
0
6mer
199845-199869
0.002
1
7mer
149499-149517
0.002
2
6mer
42206-42228
0.002
2
7mer
81998-82017
0.002
0
7mer
158641-158664
0.002
1
7mer
177939-177961
0.002
0
6mer
198535-198545
0.002
1
6mer
172827-172848
0.002
2
7mer
226984-227008
0.002
0
7mer
142451-142460
0.002
1
7mer
259650-259676
0.002
0
6mer
245831-245855
0.002
0
6mer
145723-145749
0.002
0
6mer
212268-212283
0.002
Not Conserved
6mer
2630-2652
0.002
2
6mer
86608-86624
0.002
1
6mer
171521-171539
0.002
1
6mer
7394-7411
0.002
3
6mer
13938-13955
0.002
3
7mer
170252-170269
0.002
0
6mer
150075-150087
0.002
1
6mer
68265-68281
0.002
1
7mer
159572-159589
0.002
1
7mer
31974-32000
0.002
Not Conserved
6mer
115859-115878
0.002
2
7mer
1848-1871
0.002
2
6mer
20637-20657
0.002
4
6mer
227579-227603
0.001
1
6mer
92263-92286
0.001
1
6mer
6368-6392
0.001
2
6mer
111479-111501
0.001
1
6mer
37085-37106
0.001
1
6mer
48916-48931
0.001
1
6mer
15442-15461
0.001
0
6mer
159861-159884
0.001
1
7mer
30356-30382
0.001
2
6mer
246244-246270
0.001
Not Conserved
6mer
80195-80213
0.001
0
6mer
195630-195651
0.001
0
6mer
246531-246557
0.001
0
6mer
248259-248277
0.001
0
6mer
142053-142076
0.001
1
6mer
90709-90728
0.001
0
6mer
36792-36811
0.001
1
6mer
9862-9888
0.001
2
6mer
64099-64118
0.001
1
6mer
158241-158260
0.001
1
6mer
33891-33913
0.001
0
6mer
204076-204089
0.001
1
6mer
135435-135452
0.001
1
6mer
18897-18911
0.001
1
6mer
245065-245084
0.001
0
6mer
137734-137757
0.001
1
6mer
70701-70720
0.001
1
6mer
115620-115646
0.001
0
6mer
6616-6641
0.001
0
6mer
203213-203232
0.001
1
6mer
16561-16585
0.001
1
6mer
114684-114709
0.001
0
6mer
176133-176152
0.001
1
6mer
144286-144304
0.001
1
6mer
76126-76145
0.001
0
6mer
263634-263653
0.001
0
6mer
139860-139877
0.001
1
6mer
51238-51256
0.001
1
6mer
141140-141159
0.001
5
6mer
24521-24546
0.001
1
6mer
105488-105507
0.001
1
6mer
138323-138342
0.001
0
6mer
90173-90192
0.001
1
6mer
223263-223280
0.001
1
6mer
217596-217621
0.001
0
6mer
30259-30274
0.001
0
6mer
24958-24972
0.001
1
6mer
174069-174088
0.001
1
6mer
127706-127725
0.001
0
8mer+mismatch
259981-260007
0.001
Not Conserved
6mer
16655-16673
0.001
0
6mer
247911-247933
0.001
0
6mer
25001-25027
0.001
Not Conserved
6mer
217278-217298
0.001
1
6mer
257237-257260
0.001
0
6mer
218366-218386
0.001
1
6mer
79819-79838
0.001
1
6mer
134766-134785
0.001
0
6mer
255399-255418
0.001
1
6mer
71384-71403
0.001
0
6mer
233862-233881
0.001
0
6mer
43870-43889
0.001
1
6mer
111055-111074
0.001
0
6mer
247428-247447
0.001
0
6mer
244625-244644
0.001
0
6mer
152824-152841
0.001
1
6mer
170028-170047
0.001
0
6mer
243152-243171
0.001
0
6mer
70981-71000
0.001
0
6mer
169463-169482
0.001
Not Conserved
6mer
205831-205853
0.001
Not Conserved
6mer
219075-219094
0.001
0
6mer
164536-164555
0.001
0
6mer
201785-201804
0.001
Not Conserved
6mer
236445-236472
0.000
Not Conserved
6mer
187076-187101
0.000
Not Conserved
6mer
115872-115886
0.000
1
RP4-568C11.4
hsa-miR-221-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620459
Biotype: lincRNA
Gene id: ENSG00000274173
Gene Name: RP4-568C11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
613-629
0.070
0
7mer
960-976
0.036
0
XLOC_001711
hsa-miR-221-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003906
Biotype: transcript isomorph
Gene id: XLOC_001711
Gene Name: XLOC_001711
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
416-436
0.095
1
RP11-526P5.2
hsa-miR-221-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000438753
Biotype: lincRNA
Gene id: ENSG00000235281
Gene Name: RP11-526P5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
692-711
0.084
6
RP11-757G1.6
hsa-miR-221-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
436-460
0.079
0
XLOC_003701
hsa-miR-221-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008259
Biotype: transcript isomorph
Gene id: XLOC_003701
Gene Name: XLOC_003701
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-176
0.077
0
RP11-340A13.1
hsa-miR-221-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507912
Biotype: retained_intron
Gene id: ENSG00000249382
Gene Name: RP11-340A13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-41
0.075
1
RP11-244B22.11
hsa-miR-221-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565523
Biotype: lincRNA
Gene id: ENSG00000261800
Gene Name: RP11-244B22.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-468
0.073
0
RP11-397A16.3
hsa-miR-221-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2019-2045
0.037
1
6mer
178-201
0.018
1
6mer
579-604
0.017
1
RP11-340A13.1
hsa-miR-221-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512911
Biotype: lincRNA
Gene id: ENSG00000249382
Gene Name: RP11-340A13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
365-390
0.071
1
RP11-529K1.2
hsa-miR-221-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562077
Biotype: antisense
Gene id: ENSG00000261777
Gene Name: RP11-529K1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-31
0.066
0
6mer
1224-1243
0.002
0
RP11-340A13.1
hsa-miR-221-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514707
Biotype: lincRNA
Gene id: ENSG00000249382
Gene Name: RP11-340A13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-69
0.067
1
RP11-147L13.8
hsa-miR-221-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591222
Biotype: lincRNA
Gene id: ENSG00000267731
Gene Name: RP11-147L13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2859-2886
0.066
Not Conserved
RP11-649E7.5
hsa-miR-221-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555043
Biotype: antisense
Gene id: ENSG00000258377
Gene Name: RP11-649E7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2422-2442
0.065
0
XLOC_010623
hsa-miR-221-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022026
Biotype: transcript isomorph
Gene id: XLOC_010623
Gene Name: XLOC_010623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-34
0.064
8
XLOC_010634
hsa-miR-221-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022035
Biotype: transcript isomorph
Gene id: XLOC_010634
Gene Name: XLOC_010634
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-90
0.064
7
RP11-662J14.2
hsa-miR-221-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557101
Biotype: lincRNA
Gene id: ENSG00000258480
Gene Name: RP11-662J14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
58-80
0.047
3
8mer
117-139
0.016
0
RP11-498E2.8
hsa-miR-221-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602692
Biotype: lincRNA
Gene id: ENSG00000270102
Gene Name: RP11-498E2.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-368
0.062
3
MIR6818
hsa-miR-221-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33075-33093
0.011
0
7mer
49028-49050
0.010
1
8mer
18173-18195
0.005
2
7mer
46304-46331
0.004
2
6mer
31168-31186
0.003
5
7mer
37157-37178
0.003
0
6mer
3693-3715
0.003
5
6mer
11537-11560
0.002
4
6mer
22855-22879
0.002
3
6mer
33880-33905
0.002
1
6mer
5734-5759
0.002
1
6mer
429-448
0.002
0
6mer
12765-12778
0.002
1
6mer
1582-1592
0.002
3
6mer
25267-25284
0.001
1
6mer
40406-40421
0.001
0
6mer
40144-40163
0.001
0
6mer
22490-22507
0.001
1
6mer
39282-39308
0.001
0
6mer
22328-22347
0.001
0
6mer
3146-3165
0.001
0
6mer
32405-32428
0.001
0
6mer
21398-21420
0.001
0
CTA-125H2.2
hsa-miR-221-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609809
Biotype: antisense
Gene id: ENSG00000231933
Gene Name: CTA-125H2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-221-3p
Sequence: agcuacauugucugcuggguuuc
MirBase ID: MIMAT0000278
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
756-769
0.059
6
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